PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462921848
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 165aa    MW: 17730.9 Da    PI: 9.2675
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462921848genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.51.7e-25288583
               -..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
         B3  5 ltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                tpsdv++++rlv+pk +ae+h      + + + ++ l +ed +g  ++W+++++y+++s++yvlt+GW++Fv+ +gL +gD+v+F+
  462921848  2 VTPSDVGRLNRLVVPKVHAEKHfpplgdDDDAAAPVLLAFEDGDGggKVWRFRYSYWGSSQSYVLTRGWSRFVRGKGLAAGDTVTFS 88
               589************************9888899********88888***************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.591106IPR003340B3 DNA binding domain
SMARTSM010191.4E-12197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-31290IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-22289IPR003340B3 DNA binding domain
CDDcd100176.07E-22287No hitNo description
SuperFamilySSF1019361.29E-24289IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
AVTPSDVGRL NRLVVPKVHA EKHFPPLGDD DDAAAPVLLA FEDGDGGGKV WRFRYSYWGS  60
SQSYVLTRGW SRFVRGKGLA AGDTVTFSQA ATATTASAAG EISDKRRMFI ECRKRKRTTK  120
DGGGGMVVDD CPQHGGERVV RLFGANIAAA IGVHTSFDRQ LDACS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-3619017103DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104116KRRMFIECRKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440616.17e-47hypothetical protein SORBIDRAFT_09g004140
SwissprotQ0DXB11e-43Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
TrEMBLC5Z0G98e-47C5Z0G9_SORBI; Putative uncharacterized protein Sb09g004140
STRINGSb09g004140.12e-46(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.24e-33related to ABI3/VP1 2